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Structural restraints in the SARS-CoV-2 spike tail control its intra-cellular trafficking to virion assembly and immune presentation sites
Abstract   Peer reviewed

Structural restraints in the SARS-CoV-2 spike tail control its intra-cellular trafficking to virion assembly and immune presentation sites

Syed Saif Hasan, Debajit Dey, Suruchi Singh, Enya Qing, Yanan He, Yihong Chen, Benjamin Jennings, Whitaker Cohn, Lokesh Gakhar, Nicholas J. Schnicker, …
Biophysical journal, Vol.123(3_Supplement 1), pp.480a-481a
02/08/2024
DOI: 10.1016/j.bpj.2023.11.2918

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Abstract

The spike (S) protein of SARS-CoV-2 is delivered to the virion assembly site in the ER-golgi intermediate compartment (ERGIC) from both the ER and cis-Golgi in infected cells. However, the relevance and modulatory mechanism of this bidirectional trafficking are unclear. Here, using an integrated crystallographic, NMR, single particle cryoEM, biophysical, and cellular analyses, we show that S incorporation into virions and viral fusogenicity are determined by coatomer-dependent S delivery from the cis-Golgi and restricted by S-coatomer dissociation. Although S mimicry of the host coatomer-binding dibasic motif ensures retrograde trafficking to the ERGIC, avoidance of the host-like C-terminal acidic residue is critical for S-coatomer dissociation for incorporation into virions or export to the plasma membrane for cell-cell fusion and presentation to the host immune system. Because this C-terminal residue is the key determinant of SARS-CoV-2 assembly, fusogenicity, and immunogenic presentation, our work provides a framework for the export of S protein encoded in genetic vaccines for surface display and immune activation.

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