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Modeling The Dynamics of Second Messenger Pathways
Book chapter

Modeling The Dynamics of Second Messenger Pathways

Kim. T. Blackwell and Jeanette Hellgren Kotaleski
Neuroscience Databases, pp.63-79
Springer US
2002
DOI: 10.1007/978-1-4615-1079-6_5

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Abstract

Understanding the effect of neuromodulators requires modeling the dynamics of second messenger pathways and their effects on channel properties. Chemesis is software for modeling enzyme reactions, stoichiometric reactions, diffusion, and ligand gating of channels and is used in conjunction with GENESIS, the software program for neuronal modeling. This chapter explains the differential equations and corresponding Chemesis objects that implement these reactions. Glutamate stimulated IP3 production and calcium waves are examples of the second messenger pathways that can be implemented in Chemesis.
Enzymes calcium diffusion dynamics second messengers

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