Logo image
Delay differential equation approach to oligomerization reveals the delay dynamics underlying oscillations in mitochondrial fission
Dissertation   Open access

Delay differential equation approach to oligomerization reveals the delay dynamics underlying oscillations in mitochondrial fission

Kitrick Fynaardt
University of Iowa
Doctor of Philosophy (PhD), University of Iowa
Spring 2026
DOI: 10.25820/etd.008379
pdf
KitrickFynaardtThesis5.35 MBDownloadView
Open Access
nb
Atomization Bifurcation Diagram131.71 kBDownloadView
supplemental Code for figure. Open Access
nb
Atomization Bifurcation Structure48.12 kBDownloadView
supplemental Code for figure. Open Access
nb
Atomization tstar Calculation15.96 kBDownloadView
supplemental Code for figure. Open Access
mlx
AtomizationFullTheta111.06 kBDownloadView
supplemental Code for figure. Open Access

Abstract

Disruptions in the balance of mitochondrial fission and fusion contribute to a host of diseases including cardiovascular, metabolic, and neurodegenerative, as well as cancer. Leinheiser et al. proposed a mechanistic model for dynamin related protein 1 (Drp1)-dependent mitochondrial fission which relies on the oligomerization of Drp1. In this work, we propose an alternative state-dependent delay-differential equation (sdDDE) model, which reveals the intrinsic delay dynamics in oligomerization and their effects on mitochondrial fission. To develop this sdDDE model, we generate a simplified model which disallows oligomer disassembly on the mitochondrial membrane. Following homogenization, the simplified model has two steady states. One is dominated by medium-sized oligomers that never reach sufficient length to facilitate a fission event. As a consequence, fission never occurs when initial conditions reside within the basin of attraction of the fission-free equilibrium. We therefore reincorporate oligomer disassembly on the mitochondrial membrane. However, the stable, fission-free equilibrium persists. To eliminate this fission-free equilibrium, we incorporate an atomization term into the oligomerization mechanism. The homogenization of this system results in an advection PDE with non-local velocity and boundary interactions. The PDE system yields an sdDDE for the partial moments. This sdDDE has an analogous Hopf bifurcation to the Leinheiser et al.~fission model, demonstrating that the oscillatory dynamics of that model rely on an implicit delay.
DDE delay-differential equation Hopf bifurcation mitochondrial dynamics mitochondrial fission

Details

Metrics

1 Record Views
Logo image