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Information sharing for sequential data analysis based on Gaussian process and mixed effects models
Dissertation

Information sharing for sequential data analysis based on Gaussian process and mixed effects models

Zengchenghao Xia
University of Iowa
Doctor of Philosophy (PhD), University of Iowa
Spring 2026
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Thesis_Zengchenghao3.71 MB
Embargoed Access, Embargo ends: 06/29/2028

Abstract

Sequential and longitudinal data arise in many scientific and engineering applications where observations are collected repeatedly over time, across related processes, or from heterogeneous subjects. A central statistical challenge in such settings is how to borrow information across related but non-identical units to improve prediction and inference when data are limited, while still preserving meaningful heterogeneity. This dissertation studies structured information sharing for sequential data analysis and develops three methodological contributions that implement this idea at two complementary levels: sharing information across related processes, and sharing information across heterogeneous subjects. At the process level, the first contribution develops a real-time transfer active learning framework for functional regression and prediction based on a tailored multi-output Gaussian process. The framework addresses the cold-start problem by transferring information from data-rich source processes to a data-scarce target process. A convolution-process-based covariance structure is introduced to characterize nonlinear cross-process dependence and to support interpretable information sharing at the functional-relationship level, and an iterative Bayesian updating procedure aligns real-time posterior inference with the iterative nature of active learning. Theoretical analysis establishes monotone improvement of the integrated mean squared error objective under the proposed framework. The effectiveness of the framework is demonstrated on numerical studies and on two real case studies in electrochemical impedance spectroscopy and reduced graphene oxide field-effect transistor sensor calibration. At the subject level, the second contribution develops a mixed-effect hidden Markov model for intensive longitudinal nurse fatigue data collected through a 14-day ecological momentary assessment study of 675 nurses, with 596 nurses contributing usable longitudinal fatigue records. The model represents fatigue progression through latent states and allows transition probabilities to depend on both observed covariates and subject-specific random effects, thereby supporting individualized transition assessment across a heterogeneous nursing population while borrowing strength across nurses through shared population-level structure. The analysis identifies poor sleep quality, night-shift work, age, and adequate time away from work as key predictors of fatigue transitions, and yields individualized transition matrices that can be used to inform scheduling and intervention strategies. The third contribution addresses a methodological gap in the modeling of multivariate ordinal time series that is not resolved by existing approaches: how to jointly capture continuous latent-state dynamics, ordered categorical observations, and systematic differences in how subjects use the response scale. To address this gap, the dissertation develops the Random Effects Ordinal State-Space Model, which combines a multivariate continuous latent-state process with subject-specific dynamic thresholds initialized through random effects. This design recovers within-category variation at the latent level even when only coarse ordinal observations are available, and explicitly separates latent-state heterogeneity from heterogeneous use of the response scale across subjects. Estimation is carried out through a Monte Carlo expectation-maximization algorithm with sequential Monte Carlo smoothing, and theoretical results are established for identifiability, local convergence of the MCEM updates, and particle approximation consistency of the one-step-ahead predictive distribution. On the nurse fatigue application and case-calibrated simulation studies, the proposed model yields improved predictive performance relative to established baselines, with the largest gains in the data-scarce settings most relevant to clinical decision-making. Taken together, these three contributions show that structured information sharing, whether implemented through a covariance structure across related processes or through random effects and random thresholds across heterogeneous subjects, can improve prediction and inference in sequential data settings while preserving the forms of heterogeneity most relevant to each application, and that the largest benefits arise precisely in the data-scarce regimes where traditional single-unit modeling is least reliable.
Gaussian process mixed-effect hidden Markov model nurse fatigue ordinal state-space model sequential data analysis transfer active learning

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