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Quantifying model selection uncertainty: bootstrap-based measures for model comparisons and the evaluation of regression effects in multimodeling frameworks
Dissertation

Quantifying model selection uncertainty: bootstrap-based measures for model comparisons and the evaluation of regression effects in multimodeling frameworks

Andres David Dajles
University of Iowa
Doctor of Philosophy (PhD), University of Iowa
Spring 2025
DOI: 10.25820/etd.007880
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Andres_Dajles_Thesis1.38 MB
Embargoed Access, Embargo ends: 06/26/2027

Abstract

For statistical modeling applications, this dissertation develops and investigates inferential procedures that do not presuppose a model represents the truth, and that accommodate the uncertainty inherent in the model selection process. Most practitioners of statistics heavily rely on p-values to decide between two competing models. However, traditional hypothesis testing requires that the null model is nested within a properly specified alternative, and the p-values are computed under the assumption that the null model represents the truth. Needless to say, such a framework is inherently limiting, and based on assumptions that are unrealistic in practice. In this work, we introduce measures that estimate the probability that a candidate null model is closer to the data-generating model than a competing alternative. The measures do not assume that either the null or the alternative model is true, and do not require the competing models to be nested. In modeling applications involving multiple explanatory variables that can potentially characterize an outcome of interest, practitioners can select from a number of different candidate models based on various subsets of these explanatory factors. However, the most common practice is to choose one model from the candidate collection, and perform inference based on this final model, implicitly proceeding as though none of the other candidate models were ever considered. The consequences of ignoring model selection variability include potentially biased effect estimates, overly optimistic confidence intervals, and the failure to replicate results on different data sets representing the same phenomenon. In this thesis, we propose a bootstrap-based multimodel approach for the analysis of effect estimates in the context of linear regression. We utilize the nonparametric bootstrap to conduct the model selection procedure multiple times. At each iteration, we consider the bootstrap effect estimate from the model being selected. The final, composite estimate is based on an average of all the estimates from these bootstrap selected models. Moreover, the bootstrap distribution of the replicated effect estimates allows us to compute the zero-value, which represents the probability that the estimated effect is equal to zero, and to build bootstrap percentile-based confidence intervals. The composite estimate, the zero-value and the bootstrap confidence intervals provide an inferential framework for linear regression that accounts for model selection variability.
Biostatistics

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