Spike sorting of neural data from multiple electrodes is a difficult problem that depends heavily on inputs from human experts. It is an important processing step in the study of various brain functions and to detect various neural disorders based on the activity of neurons. Here, we propose a novel, unsupervised, feature-based spike sorting method based on the K-means clustering algorithm to distinguish these spikes. It involves weighing the various features of the neural data based on their information content as well as the eigenvalues of their projections on the lower-dimensional space and clustering them in the absence of ground truth. We illustrate the method on simulated data and real data recorded from retinal degeneration (rd) mice. We also compared our method against previously reported algorithms such as principal component analysis (PCA) based spike sorting and the results found are very encouraging for determining the activity of each neuron and early detection of various neural disorders including blindness (Retinitis Pigmentosa).
Thesis
A feature-based algorithm for spike sorting involving intelligent feature-weighting mechanism
University of Iowa
Master of Science (MS), University of Iowa
Summer 2011
DOI: 10.17077/etd.n2lq528g
Free to read and download, Open Access
Abstract
Details
- Title: Subtitle
- A feature-based algorithm for spike sorting involving intelligent feature-weighting mechanism
- Creators
- Kaustubh Anil Patwardhan - University of Iowa
- Contributors
- Er-Wei Bai (Advisor)Steven Stasheff (Committee Member)Punam Saha (Committee Member)
- Resource Type
- Thesis
- Degree Awarded
- Master of Science (MS), University of Iowa
- Degree in
- Electrical and Computer Engineering
- Date degree season
- Summer 2011
- Publisher
- University of Iowa
- DOI
- 10.17077/etd.n2lq528g
- Number of pages
- vi, 93 pages
- Copyright
- Copyright 2011 Kaustubh Anil Patwardhan
- Language
- English
- Description bibliographic
- Includes bibliographical references (pages 92-93).
- Academic Unit
- Electrical and Computer Engineering
- Record Identifier
- 9983776959602771
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