<p>Cerebral aneurysm formation, growth, and rupture are active areas of investigation in the medical community. To model and test the mechanical processes involved, small aneurysm (< 5 mm) segmentations need to be performed quickly and reliably for large patient populations. In the absence of robust automatic segmentation methods, the Vascular Modeling Toolkit (VMTK) provides scripts for the complex tasks involved in computer-assisted segmentation. Though these tools give researchers a great amount of flexibility, they also make reproduction of results between investigators difficult and unreliable. We introduce a VMTK pipeline protocol that minimizes the user interaction for vessel and aneurysm segmentation and a training method for new users. This protocol allows for decision tree handling for CTA and MRA images. Furthermore, we investigate the variation between two expert users and two novice users for six patients using shape index measures developed by Ma et al. and Raghavan et al.</p>
Biomedical Engineering and Bioengineering cerebral aneurysms computer-assisted segmentation reproducible research shape indicies user variation VMTK
Details
Title: Subtitle
Development of a protocol for 3-D reconstruction of brain aneurysms from volumetric image data
Creators
David Michael Welch - University of Iowa
Contributors
Madhavan L. Raghavan (Advisor)
Edwin Dove (Committee Member)
David Hasan (Committee Member)
Punam Saha (Committee Member)
Sarah Vigmostad (Committee Member)
Resource Type
Thesis
Degree Awarded
Master of Science (MS), University of Iowa
Degree in
Biomedical Engineering
Date degree season
Summer 2010
Publisher
University of Iowa
DOI
10.17077/etd.c8d11mr0
Number of pages
vii, 91 pages
Copyright
Copyright 2010 David Michael Welch
Language
English
Description bibliographic
Includes bibliographical references (pages 85-91).
Academic Unit
Roy J. Carver Department of Biomedical Engineering
Record Identifier
9983777121202771
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Development of a protocol for 3-D reconstruction of brain aneurys