Logo image
MOSAIC: an investigation of quantitative morphometrics of vesicular samples using OpenCV blob detection
Thesis   Open access

MOSAIC: an investigation of quantitative morphometrics of vesicular samples using OpenCV blob detection

Adam Moritz
University of Iowa
Master of Science (MS), University of Iowa
Autumn 2025
DOI: 10.25820/etd.008237
pdf
Adam Moritz Master of Science Thesis Multi Level 20252.36 MBDownloadView
Open Access
docx
MOSAIC_Operations_Guide405.59 kBDownloadView
PresentationQuck start guide to using MOSAIC morphometrics tool/utility Open Access
zip
mosaic43.54 MBDownloadView
MOSAIC zip file includes everything needed to unzip and run on a windows PC. download, unzip, and search/double-click mosaic.exe to run the utility/tool Open Access
zip
mosaic_tif_images_with_results11.08 MBDownloadView
several example tif files to test mosaic with as well as some produced csv results to review Open Access

Abstract

Vesicles are a common component of volcanic samples. Geologists use vesicle size distribution and vesicularity to understand volcanic processes such as style of degassing. These quantitative metrics are difficult to evaluate effectively using existing methods. A new method has been developed to analyze these metrics. The Modeling Object Structure & Analysis Information Calculator (MOSAIC) is a software application designed to produce quantitative morphometrics for geological digital images. It focuses on vesicle objects using the open-source computer vision image processing library OpenCV. MOSAIC applies blob detection algorithms using spatial proximity and pixel threshold calculations to determine vesicle designations based on probability distributions consistent with a Laplacian of gaussian context filter. MOSAIC reports metrics of circularity, convexity, compactness, roughness, roundness and sphericity as well as area, volume, symmetry, and vesicularity quantities. Several case studies were used to test the newly developed method. 3D imagery from a peralkaline highly vesicular pumice (New Zealand) and a moderately vesicular Pele’s hair sample (Hawaii) were acquired from synchrotron X-ray tomography instruments. Artificially generated pseudo geologic images were also used for comparisons between various vesicle analysis methods. This study demonstrates the efficacy of the newly developed method to quantitatively analyze vesicular samples and provide valuable geological interpretations.
Computed Tomography Morphology Digital Imagery Morphometrics Quantiative Vesicles Vesicularity

Details

Metrics

1 Record Views
Logo image