Journal article
Conformational preferences of monohydrated clusters of imidazole derivatives revisited
Physical chemistry chemical physics : PCCP, Vol.17(31), pp.20080-20092
2015
DOI: 10.1039/C5CP02422F
PMID: 26138267
Abstract
We present the IR spectroscopic investigations of benzimidazole (BIM),N-methylbenzimidazole (MBIM), and their monohydrates (W1) carried out in a supersonic jet in the region of N–H, C–H, and O–H stretching fundamentals. The C–H stretching modes in the monomers were studied with the aim of identifying the C(2)H mode (the C atom between the two N atoms in the imidazole moiety) which is known to play an important role as a H-bond donor in enzymes and ionic liquids. The assignment was aided by quantum chemical calculations as well as the literature data for FTIR measurements in the matrix. The monohydrated clusters were investigated for a global comparison with previously reported conformations of hydrated imidazole and related derivatives in the gas phase, matrices, and He nanodroplets. The BIM–W1complex showed the presence of three conformers; an N–H⋯O bound conformer (A′) and two O–H⋯N bound conformers, tilted towards the phenyl side (A) and the imidazole side (B), respectively. Although both A′ and B type conformers have been reported in the literature, our experiments identify a new conformer (conformer A) in the gas phase for the first time which has also been reported in crystal structures of histidine containing proteins. The binding energies of the three conformers were found to be of comparable magnitude, with the N–H⋯O bound structure lying in between (∼0.02–0.04 kcal mol−1) the O–H⋯N bound ones at the counterpoise corrected (cp) MP2/aug-cc-pVDZ level of theory. The formation of two distinct but closely related O–H⋯N bound conformers (A and B) was additionally confirmed by studying the MBIM–W1complex. Binding energies of the MBIM–W1conformers were found to be higher than those of the analogous BIM–W1conformers by 0.2 kcal mol−1at the cp-MP2/aug-cc-pVDZ level. The C(2)–H⋯O or π bound water structures were not observed in the beam for monohydrated clusters of either monomer. While QTAIM calculations predicted secondary stabilization in the A type conformer by a C(4)–H⋯O hydrogen bond, such an effect due to a possible C(2)–H⋯O interaction was not found for conformer B. Experimentally, however, no spectral evidence was found for either the C(4)–H⋯O or the C(2)–H⋯O interaction.
Details
- Title: Subtitle
- Conformational preferences of monohydrated clusters of imidazole derivatives revisited
- Creators
- Aditi Bhattacherjee - Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400 005, IndiaSanjay Wategaonkar - Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400 005, India
- Resource Type
- Journal article
- Publication Details
- Physical chemistry chemical physics : PCCP, Vol.17(31), pp.20080-20092
- DOI
- 10.1039/C5CP02422F
- PMID
- 26138267
- ISSN
- 1463-9076
- eISSN
- 1463-9084
- Language
- English
- Date published
- 2015
- Academic Unit
- Chemistry
- Record Identifier
- 9984217454402771
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