Journal article
Excel-SBOL Converter: Creating SBOL from Excel Templates and Vice Versa
ACS synthetic biology, Vol.12(1), pp.340-346
01/20/2023
DOI: 10.1021/acssynbio.2c00521
PMID: 36595709
Abstract
Standards support synthetic biology research by enabling the exchange of component information. However, using formal representations, such as the Synthetic Biology Open Language (SBOL), typically requires either a thorough understanding of these standards or a suite of tools developed in concurrence with the ontologies. Since these tools may be a barrier for use by many practitioners, the Excel-SBOL Converter was developed to facilitate the use of SBOL and integration into existing workflows. The converter consists of two Python libraries: one that converts Excel templates to SBOL and another that converts SBOL to an Excel workbook. Both libraries can be used either directly or via a SynBioHub plugin.
Details
- Title: Subtitle
- Excel-SBOL Converter: Creating SBOL from Excel Templates and Vice Versa
- Creators
- Jeanet Mante - University of Colorado BoulderJulian Abam - University of Colorado BoulderSai P Samineni - University of Colorado BoulderIsabel M Pötzsch - University of CambridgeJacob Beal - RTXChris J Myers - University of Colorado Boulder
- Resource Type
- Journal article
- Publication Details
- ACS synthetic biology, Vol.12(1), pp.340-346
- DOI
- 10.1021/acssynbio.2c00521
- PMID
- 36595709
- ISSN
- 2161-5063
- eISSN
- 2161-5063
- Language
- English
- Date published
- 01/20/2023
- Academic Unit
- Electrical and Computer Engineering
- Record Identifier
- 9984627289502771
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