Extracting Patient-level Social Determinants of Health into the OMOP Common Data Model

Jimmy Phuong; Elizabeth Zampino; Nicholas Dobbins; Juan Espinoza; Daniella Meeker; Heidi Spratt; Charisse Madlock-Brown; Nicole G Weiskopf; Adam Wilcox

Extracting Patient-level Social Determinants of Health into the OMOP Common Data Model

Journal article

Peer reviewed

Extracting Patient-level Social Determinants of Health into the OMOP Common Data Model

Jimmy Phuong, Elizabeth Zampino, Nicholas Dobbins, Juan Espinoza, Daniella Meeker, Heidi Spratt, Charisse Madlock-Brown, Nicole G Weiskopf and Adam Wilcox

AMIA ... Annual Symposium proceedings, Vol.2021, pp.989-998

2021

PMCID: PMC8861735

PMID: 35308947

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Abstract

Deficiencies in data sharing capabilities limit Social Determinants of Health (SDoH) analysis as part of COVID-19 research. The National COVID Cohort Collaborative (N3C) is an example of an Electronic Health Record (EHR) database of patients tested for COVID-19 that could benefit from a SDoH elements framework that captures various screening instruments in EHR data warehouse systems. This paper uses the University of Washington Enterprise Data Warehouse (a data contributor to N3C) to demonstrate how SDoH can be represented and managed to be made available within an OMOP common data model. We found that these data varied by type of social determinants data and where it was collected, in the time period that it was collected, and in how it was represented.

Electronic Health Records

COVID-19 - epidemiology

Humans

Mass Screening

Social Determinants of Health

Surveys and Questionnaires

Details

Title: Subtitle: Extracting Patient-level Social Determinants of Health into the OMOP Common Data Model
Creators: Jimmy Phuong - University of Washington
Elizabeth Zampino - University of Washington
Nicholas Dobbins - University of Washington
Juan Espinoza - Children's Hospital of Los Angeles
Daniella Meeker - Department of Preventive Medicine, University of Southern California, Los Angeles, California
Heidi Spratt - Preventative Medicine and Population Health, University of Texas Medical Branch, Galveston, Texas
Charisse Madlock-Brown - University of Tennessee Health Science Center
Nicole G Weiskopf - Department of Medical Informatics and Clinical Epidemiology, OHSU, Portland, Oregon
Adam Wilcox - University of Washington
Resource Type: Journal article
Publication Details: AMIA ... Annual Symposium proceedings, Vol.2021, pp.989-998
PMID: 35308947
PMCID: PMC8861735
eISSN: 1942-597X
Grant note: U24 TR002306 / NCATS NIH HHS UL1 TR001855 / NCATS NIH HHS
Language: English
Date published: 2021
Academic Unit: Nursing
Record Identifier: 9984446740502771

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