Journal article
Investigating rare pathogenic/likely pathogenic exonic variation in bipolar disorder
Molecular psychiatry, Vol.26(9), pp.5239-5250
09/01/2021
DOI: 10.1038/s41380-020-01006-9
PMID: 33483695
Abstract
Bipolar disorder (BD) is a serious mental illness with substantial common variant heritability. However, the role of rare coding variation in BD is not well established. We examined the protein-coding (exonic) sequences of 3,987 unrelated individuals with BD and 5,322 controls of predominantly European ancestry across four cohorts from the Bipolar Sequencing Consortium (BSC). We assessed the burden of rare, protein-altering, single nucleotide variants classified as pathogenic or likely pathogenic (P-LP) both exome-wide and within several groups of genes with phenotypic or biologic plausibility in BD. While we observed an increased burden of rare coding P-LP variants within 165 genes identified as BD GWAS regions in 3,987 BD cases (meta-analysis OR = 1.9, 95% CI = 1.3-2.8, one-sided p = 6.0 x 10(-4)), this enrichment did not replicate in an additional 9,929 BD cases and 14,018 controls (OR = 0.9, one-side p = 0.70). Although BD shares common variant heritability with schizophrenia, in the BSC sample we did not observe a significant enrichment of P-LP variants in SCZ GWAS genes, in two classes of neuronal synaptic genes (RBFOX2 and FMRP) associated with SCZ or in loss-of-function intolerant genes. In this study, the largest analysis of exonic variation in BD, individuals with BD do not carry a replicable enrichment of rare P-LP variants across the exome or in any of several groups of genes with biologic plausibility. Moreover, despite a strong shared susceptibility between BD and SCZ through common genetic variation, we do not observe an association between BD risk and rare P-LP coding variants in genes known to modulate risk for SCZ.
Details
- Title: Subtitle
- Investigating rare pathogenic/likely pathogenic exonic variation in bipolar disorder
- Creators
- Xiaoming Jia - Univ Calif San Francisco, Weill Inst Neurosci, San Francisco, CA 94158 USAFernando S. Goes - Johns Hopkins UniversityAdam E. Locke - Washington University in St. LouisDuncan Palmer - Broad Inst MIT & Harvard, Stanley Ctr Psychiat Res, Cambridge, MA 02142 USAWeiqing Wang - Icahn School of Medicine at Mount SinaiSarah Cohen-Woods - King's College LondonGiulio Genovese - Harvard Medical SchoolAnne U. Jackson - University of MichiganChen Jiang - Kaiser PermanenteMark Kvale - Univ Calif San Francisco, Inst Human Genet, San Francisco, CA 94143 USANiamh Mullins - Icahn Sch Med Mt Sinai, Dept Genet & Gen Sci, Pamela Sklar Div Psychiat Genom, New York, NY 10029 USAHoang Nguyen - Icahn School of Medicine at Mount SinaiMehdi Pirooznia - NHLBI, Bioinformat & Computat Core, Bldg 10, Bethesda, MD 20892 USAMargarita Rivera - Kings Coll London, Med Res Council, Social Genet & Dev Psychiat Ctr, Inst Psychiat Psychol & Neurosci, London, EnglandDouglas M. Ruderfer - Vanderbilt University Medical CenterLing Shen - Kaiser PermanenteKhanh Thai - Kaiser Permanente Northern Calif, Div Res, Oakland, CA 94611 USAMatthew Zawistowski - University of MichiganYongwen Zhuang - Univ Michigan, Dept Biostat, Ann Arbor, MI 48109 USAGoncalo Abecasis - University of MichiganHuda Akil - University of MichiganSarah Bergen - Karolinska Inst, Dept Med Epidemiol & Biostat, Stockholm, SwedenMargit Burmeister - University of MichiganSinead Champion - Broad InstituteMelissa DelaBastide - Cold Spring Harbor Lab, Div Res, Harbor, NY 11797 USAAnders Jureus - Karolinska Inst, Dept Med Epidemiol & Biostat, Stockholm, SwedenHyun Min Kang - University of MichiganPui-Yan Kwok - Univ Calif San Francisco, Inst Human Genet, San Francisco, CA 94143 USAJun Z. Li - University of MichiganShawn E. Levy - Vanderbilt UniversityEric T. Monson - University of UtahJennifer Moran - Massachusetts Gen Hosp, Dept Psychiat, Boston, MA 02114 USAJanet Sobell - University of Southern CaliforniaStanley Watson - Univ Michigan, Mol & Behav Neurosci Inst, Ann Arbor, MI 48109 USAVirginia Willour - University of Iowa, Iowa Neuroscience InstituteSebastian Zollner - University of MichiganRolf Adolfsson - Umea Univ, Dept Clin Sci, Umea, SwedenDouglas Blackwood - Univ Edinburgh, Div Psychiat, Edinburgh, Midlothian, ScotlandMichael Boehnke - Statistical ServiceGerome Breen - Massachusetts Rehabilitation CommissionAiden Corvin - Trinity Coll Dublin, Dept Psychiat, Dublin, IrelandNick Craddock - Cardiff UniversityArianna DiFlorio - Cardiff Univ, Sch Med, Med Res Council, Ctr Neuropsychiat Genet & Genom,Div Psychol Med &, Cardiff, WalesChristina M. Hultman - Karolinska InstitutetMikael Landen - Karolinska Inst, Dept Med Epidemiol & Biostat, Stockholm, SwedenCathryn Lewis - Kings Coll London, Med Res Council, Social Genet & Dev Psychiat Ctr, Inst Psychiat Psychol & Neurosci, London, EnglandSteven A. McCarroll - Broad InstituteW. Richard McCombie - Cold Spring Harbor Lab, Div Res, Harbor, NY 11797 USAPeter McGuffin - Kings Coll London, Med Res Council, Social Genet & Dev Psychiat Ctr, Inst Psychiat Psychol & Neurosci, London, EnglandAndrew McIntosh - Univ Edinburgh, Div Psychiat, Edinburgh, Midlothian, ScotlandAndrew McQuillin - Karolinska InstitutetDerek Morris - Trinity Coll Dublin, Dept Psychiat, Dublin, IrelandRichard M. Myers - HudsonAlpha Institute for BiotechnologyMichael O'Donovan - Cardiff Univ, Sch Med, Med Res Council, Ctr Neuropsychiat Genet & Genom,Div Psychol Med &, Cardiff, WalesRoel Ophoff - University of California, Los AngelesMarco Boks - University Medical Center UtrechtRene Kahn - Icahn Sch Med Mt Sinai, Dept Psychiat, New York, NY 10029 USAWillem Ouwehand - Univ Cambridge, Sch Clin Med, Dept Haematol, Cambridge, EnglandMichael Owen - Cardiff Univ, Sch Med, Med Res Council, Ctr Neuropsychiat Genet & Genom,Div Psychol Med &, Cardiff, WalesCarlos Pato - Univ Southern Calif, Dept Psychiat & Behav Sci, Los Angeles, CA 90033 USAMichele Pato - Univ Southern Calif, Dept Psychiat & Behav Sci, Los Angeles, CA 90033 USADanielle Posthuma - Amsterdam NeuroscienceJames B. Potash - Johns Hopkins Sch Med, Dept Psychiat & Behav Sci, Baltimore, MD 21287 USAAndreas Reif - Univ Hosp Frankfurt, Dept Psychiat, Psychosomat Med & Psychotherapy, Frankfurt, GermanyPamela Sklar - Icahn Sch Med Mt Sinai, Div Psychiat Genom, New York, NY 10029 USAJordan Smoller - Broad InstitutePatrick F. Sullivan - University of North Carolina at Chapel HillJohn Vincent - Campbell Family Mental Hlth Res Inst, Ctr Addict & Mental Hlth, Mol Neuropsychiat & Dev Lab, Toronto, ON, CanadaJames Walters - Cardiff Univ, Sch Med, Med Res Council, Ctr Neuropsychiat Genet & Genom,Div Psychol Med &, Cardiff, WalesBenjamin Neale - Broad Inst MIT & Harvard, Stanley Ctr Psychiat Res, Cambridge, MA 02142 USAShaun Purcell - Broad InstituteNeil Risch - Univ Calif San Francisco, Inst Human Genet, San Francisco, CA 94143 USACatherine Schaefer - Kaiser Permanente Northern Calif, Div Res, Oakland, CA 94611 USAEli A. Stahl - Icahn Sch Med Mt Sinai, Div Psychiat Genom, New York, NY 10029 USAPeter P. Zandi - Johns Hopkins UniversityLaura J. Scott - University of Michigan
- Resource Type
- Journal article
- Publication Details
- Molecular psychiatry, Vol.26(9), pp.5239-5250
- DOI
- 10.1038/s41380-020-01006-9
- PMID
- 33483695
- NLM abbreviation
- Mol Psychiatry
- ISSN
- 1359-4184
- eISSN
- 1476-5578
- Publisher
- Springer Nature
- Number of pages
- 12
- Grant note
- Dalio Foundation ZICHL006228 / National Heart Lung and Blood Institute; United States Department of Health & Human Services; National Institutes of Health (NIH) - USA; NIH National Heart Lung & Blood Institute (NHLBI) Kaiser Permanente Research Program on Genes, Environment, and Health R01MH106527 / 2/3 Genetic Analysis of the International Cohort Collection for Bipolar Disorder R01 MH 094145 / Whole Genome and Exome Sequencing for Bipolar Disorder (NIMH) R01 MH 085543 / Multi-ethnic GWAS of Bipolar I Disorder (NIH) NC/C011202/1 / National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs); UK Research & Innovation (UKRI); National Centre for the Replacement, Refinement & Reduction of Animals in Research (NC3Rs) R01 MH 087979; MH 087992 / Rare Bipolar Loci Identification Through Synaptome Sequencing (NIMH) RC2 AG036607 / Genetic Epidemiology Research in Adult Health and Aging (GERA) R01 MH 110437 / International Bipolar Sequencing Consortium (NIMH)
- Language
- English
- Date published
- 09/01/2021
- Academic Unit
- Psychiatry; Stead Family Department of Pediatrics; Iowa Neuroscience Institute
- Record Identifier
- 9984070133802771
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