SBOL Visual: A Graphical Language for Genetic Designs

Jacqueline Y Quinn; Robert Sidney Cox III; Aaron Adler; Jacob Beal; Swapnil Bhatia; Yizhi Cai; Joanna Chen; Kevin Clancy; Michal Galdzicki; Nathan J Hillson; Nicolas Le Novère; Akshay J Maheshwari; James Alastair McLaughlin; Chris J Myers; Umesh P; Matthew Pocock; Cesar Rodriguez; Larisa Soldatova; Guy-Bart V Stan; Neil Swainston; Anil Wipat; Herbert M Sauro

doi:10.1371/journal.pbio.1002310

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SBOL Visual: A Graphical Language for Genetic Designs

Journal article

Open access

Peer reviewed

SBOL Visual: A Graphical Language for Genetic Designs

Jacqueline Y Quinn, Robert Sidney Cox III, Aaron Adler, Jacob Beal, Swapnil Bhatia, Yizhi Cai, Joanna Chen, Kevin Clancy, Michal Galdzicki, Nathan J Hillson, …

PLoS biology, Vol.13(12), e1002310

12/01/2015

DOI: 10.1371/journal.pbio.1002310

PMCID: PMC4669170

PMID: 26633141

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Abstract

Synthetic Biology Open Language (SBOL) Visual is a graphical standard for genetic engineering. It consists of symbols representing DNA subsequences, including regulatory elements and DNA assembly features. These symbols can be used to draw illustrations for communication and instruction, and as image assets for computer-aided design. SBOL Visual is a community standard, freely available for personal, academic, and commercial use (Creative Commons CC0 license). We provide prototypical symbol images that have been used in scientific publications and software tools. We encourage users to use and modify them freely, and to join the SBOL Visual community: http://www.sbolstandard.org/visual.

Software

Animals

Chromatin - chemistry

Chromatin - metabolism

Chromatin Assembly and Disassembly

Computer-Aided Design

Cooperative Behavior

Databases, Nucleic Acid

DNA - chemistry

DNA - metabolism

Genetic Engineering - methods

Genetic Engineering - standards

Genetic Engineering - trends

Humans

Internet

Models, Genetic

Nucleotide Motifs

Publications

Regulatory Sequences, Nucleic Acid

Symbolism

Details

Title: Subtitle: SBOL Visual: A Graphical Language for Genetic Designs
Creators: Jacqueline Y Quinn - Autodesk
Robert Sidney Cox III - Kobe University
Aaron Adler - RTX
Jacob Beal - RTX
Swapnil Bhatia - Boston University
Yizhi Cai - University of Edinburgh
Joanna Chen - Lawrence Berkeley National Laboratory
Kevin Clancy - Thermo Fisher Scientific
Michal Galdzicki - Arzeda
Nathan J Hillson - Lawrence Berkeley National Laboratory
Nicolas Le Novère - Babraham Institute
Akshay J Maheshwari - Stanford University
James Alastair McLaughlin - Newcastle University
Chris J Myers - University of Utah
Umesh P - University of Kerala
Matthew Pocock - Turing Institute
Cesar Rodriguez - Florida State University
Larisa Soldatova - Brunel University London
Guy-Bart V Stan - Imperial College London
Neil Swainston - University of Manchester
Anil Wipat - Newcastle University
Herbert M Sauro - University of Washington
Resource Type: Journal article
Publication Details: PLoS biology, Vol.13(12), e1002310
DOI: 10.1371/journal.pbio.1002310
PMID: 26633141
PMCID: PMC4669170
ISSN: 1544-9173
eISSN: 1545-7885
Grant note: BB/M017702/1 / Biotechnology and Biological Sciences Research Council R41 LM010745 / NLM NIH HHS BB/M025640/1 / Biotechnology and Biological Sciences Research Council BB/M018040/1 / Biotechnology and Biological Sciences Research Council R42 HG006737 / NHGRI NIH HHS BBS/E/B/000C0419 / Biotechnology and Biological Sciences Research Council
Language: English
Date published: 12/01/2015
Academic Unit: Electrical and Computer Engineering
Record Identifier: 9984627219202771

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