Journal article
Smoothing lung segmentation surfaces in three-dimensional X-ray CT images using anatomic guidance
Academic radiology, Vol.12(12), pp.1502-1511
12/2005
DOI: 10.1016/j.acra.2005.08.008
PMID: 16321738
Abstract
Automatic lung segmentation in volumetric computed tomography (CT) images has been extensively investigated, and several methods have been proposed. Most methods distinguish the lung parenchyma from the surrounding anatomy based on the difference in CT attenuation values. This leads to an irregular and inconsistent lung boundary for the regions near the mediastinum, which can cause inconsistent boundaries both across subjects and within subjects scanned at different intervals of time. Processes like lung image registration and lung atlas construction can be affected by such inconsistencies. Therefore there is a need for a more consistent lung surface near the mediastinum.
This paper presents a fully automatic method for the three-dimensional smoothing of the lung boundary using information from the segmented human airway tree. First, using the segmented airway tree, we define a bounding box around the mediastinum for each lung, within which all operations are performed. We then define all generations of the airway tree distal to the right and left main stem bronchi to be part of the respective lungs and exclude all other segments. Finally, we perform a fast morphological closing with an ellipsoidal kernel to smooth the surface of the lung.
This method has been tested by processing the segmented lungs from eight normal datasets. The mean value of the magnitude of curvedness of the lung contours, averaged over all the datasets, is 0.13 postsmoothing, compared with 4.91 before smoothing. The accuracy of the lung contours after smoothing is assessed by comparing the automatic results to manually traced smooth lung borders by a human analyst. Averaged over all volumes, the root mean square difference between human and computer borders is 0.8691 mm after smoothing, compared with 1.3012 mm before smoothing. The mean similarity index, which is an area overlap measure based on the kappa statistic, is 0.9958 (SD 0.0032), after smoothing.
We have described a novel scheme for smoothing the lung contour around the mediastinum. The method is based on using anatomic information from the segmented airway tree. The validation results show that there is good agreement between manual and computer results. Because there are no accepted criteria for defining the lung boundary near the mediastinum, we believe our method of defining the boundary based on the structure of the airway tree provides a good basis for three-dimensional smoothing.
Details
- Title: Subtitle
- Smoothing lung segmentation surfaces in three-dimensional X-ray CT images using anatomic guidance
- Creators
- Soumik Ukil - University of IowaJoseph M Reinhardt - University of Iowa
- Resource Type
- Journal article
- Publication Details
- Academic radiology, Vol.12(12), pp.1502-1511
- DOI
- 10.1016/j.acra.2005.08.008
- PMID
- 16321738
- ISSN
- 1076-6332
- eISSN
- 1878-4046
- Grant note
- HL64368 / NHLBI NIH HHS
- Language
- English
- Date published
- 12/2005
- Academic Unit
- Roy J. Carver Department of Biomedical Engineering; Radiology
- Record Identifier
- 9984197006902771
Metrics
4 Record Views