Report - Technical Report
Establishing Data Analysis Pipeline for Bulk ATAC-Seq Datasets
OSTI.gov
U. S. Department of Energy. Office of Scientific and Technical Information
01/28/2026
DOI: 10.2172/3019677
Abstract
We developed an analysis pipeline for transposase-accessible chromatin sequencing (ATAC-Seq) data derived from bulk samples, which brings together publicly available R packages in addition to command-line tools designed for analysis of bulk ATAC-Seq data and can be run on any computer running a Linux-like operating system such as Ubuntu or Apple OSX.
Details
- Title: Subtitle
- Establishing Data Analysis Pipeline for Bulk ATAC-Seq Datasets
- Creators
- Owen P. Leiser - Pacific Northwest National LaboratoryEmma E. Carlson - Pacific Northwest National LaboratoryJavier E. Flores - Pacific Northwest National LaboratoryAndy Lin - Pacific Northwest National LaboratoryTony Y. Chiang - Pacific Northwest National LaboratoryAmy C. Sims - Pacific Northwest National Laboratory
- Resource Type
- Report
- Resource Sub-type
- Technical Report
- Publication Details
- OSTI.gov
- DOI
- 10.2172/3019677
- Publisher
- U. S. Department of Energy. Office of Scientific and Technical Information; United States
- Number of pages
- iv, 14, B11 pages
- Comment
- OSTI ID: 3019677 Report Number: PNNL-34173
- Language
- English
- Date published
- 01/28/2026
- Academic Unit
- Biostatistics
- Record Identifier
- 9985147193502771
Metrics
1 Record Views